PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040729001
Common NameGSBRNA2T00040729001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 306aa    MW: 34723.1 Da    PI: 10.4033
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040729001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32209262255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSBRNA2T00040729001 209 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 262
                          9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-15206262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-29207262IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-24209262IPR006447Myb domain, plants
PfamPF002493.8E-7210261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGVFLEKPK SNTTLPDLSL NISLPDITSK EHYRRPSQTD NNRSSNFELS LSHHHNPSSN  60
PTTRIIHCPD PRNLNLPHHQ HYNNPILNGG SLHQRVNESD INNIHRPIRG IPVYQNRSFP  120
FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HHNHYGVVGS  180
TDSSSPHHHG MIRSRFLPKM PTKRSMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL  240
ELMDVKDLTL AHVKSHLQMY RTVKTTNKPA ASSGMCNSEQ LDLTLHTYTH RMFTFFRIAF  300
QLYIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040729001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0301920.0AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds.
GenBankAY0486880.0AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds.
GenBankBT0264360.0BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606692.10.0PREDICTED: transcription repressor KAN1-like
SwissprotQ93WJ91e-136KAN1_ARATH; Transcription repressor KAN1
TrEMBLA0A078GU040.0A0A078GU04_BRANA; BnaC09g32160D protein
STRINGBra008613.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66062645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-123G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]